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Synthetic Protein Switches Viktor Stein

Synthetic Protein Switches By Viktor Stein

Synthetic Protein Switches by Viktor Stein


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Summary

Beginning with general strategies, the volume continues with coverage of peptide switches, fluorescent and bioluminescent sensors, -lactamase sensors, proteolytic sensors, optogenetic switches, as well as cellular signaling switches.

Synthetic Protein Switches Summary

Synthetic Protein Switches: Methods and Protocols by Viktor Stein

This detailed book provides state-of-the-art protocols to facilitate the construction of synthetic protein switches for a variety of applications in biotechnology and basic research. Beginning with general strategies, the volume continues with coverage of peptide switches, fluorescent and bioluminescent sensors, -lactamase sensors, proteolytic sensors, optogenetic switches, as well as cellular signaling switches. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Authoritative and practical, Synthetic Protein Switches: Methods and Protocols serves as a useful reference for life scientists from diverse research fields that range from traditional, discovery-centered disciplines, like cancer research, to newly emerging disciplines, such as synthetic biology.

Table of Contents

Part I: General Strategies and Considerations

1. Synthetic Protein Switches: Theoretical and Experimental Considerations

Viktor Stein

2. Construction of Allosteric Protein Switches by Alternate Frame Folding and Intermolecular Fragment Exchange

Jeung-Hoi Ha and Stewart N. Loh

3. Construction of Protein Switches by Domain Insertion and Directed Evolution

Lucas F. Ribeiro, Tiana D. Warren, and Marc Ostermeier

Part II: Peptide Switches

4. Catalytic Amyloid Fibrils that Bind Copper to Activate Oxygen

Alex Sternisha and Olga Makhlynets

Part III: Fluorescent and Bioluminescent Sensors

5. Ancestral Protein Reconstruction and Circular Permutation for Improving the Stability and Dynamic Range of FRET Sensors

Ben E. Clifton, Jason H. Whitfield, Inmaculada Sanchez-Romero, Michel K. Herde, Christian Henneberger, Harald Janovjak, and Colin J. Jackson

6. Method for Developing Optical Sensors Using a Synthetic Dye-Fluorescent Protein FRET Pair and Computational Modelling and Assessment

Joshua A. Mitchell, William H. Zhang, Michel K. Herde, Christian Henneberger, Harald Janovjak, Megan L. O'Mara, and Colin J. Jackson

7. Rational Design and Applications of Semi-Synthetic Modular Biosensors: SNIFITs and LUCIDs

Helen Farrants, Julien Hiblot, Rudolf Griss, and Kai Johnsson

8. Ultrasensitive Firefly Luminescent Intermediate-Based Protein-Protein Interaction Assay (FlimPIA) Based on the Functional Complementation of Mutant Firefly Luciferases

Yuki Ohmuro-Matsuyama and Hiroshi Ueda

9. Quantitative and Dynamic Imaging of ATM Kinase Activity

Shyam Nyati, Grant Young, Brian Dale Ross, and Alnawaz Rehemtulla

Part IV: -lactamase Sensors

10. Creation of Antigen-Dependent -Lactamase Fusion Protein Tethered by Circularly Permuted Antibody Variable Domains

Hiroto Iwai, Miki Kojima-Misaizu, Jinhua Dong, and Hiroshi Ueda

11. Protein and Protease Sensing by Allosteric Derepression

Goh Hui Chin, Farid J. Ghadessy, and Saurabh Nirantar

12. DNA-Specific Biosensors Based on Intramolecular -Lactamase-Inhibitor Complex Formation

Wouter Engelen and Maarten Merkx

Part V: Proteolytic Sensors

13. Engineering and Characterizing Synthetic Protease Sensors and Switches

Viktor Stein and Kirill Alexandrov

14. Characterizing Dynamic Protein-Protein Interactions Using the Genetically Encoded Split Biosensor Assay Technique Split TEV

Jan P. Wintgens, Moritz J Rossner, and Michael C. Wehr

Part VI: Optogenetic Switches

15. Development of a Synthetic Switch to Control Protein Stability in Eukaryotic Cells with Light

Christof Taxis

16. Light-Regulated Protein Kinases Based on the CRY2-CIB1 System

Wignand W.D. Muhlhauser, Maximilian Hoerner, Wilfried Weber, and Gerald Radziwill

17. Yeast-Based Screening System for the Selection of Functional Light-Driven K+ Channels

Cristian Cosentino, Laura Alberio, Gerhard Thiel, and Anna Moroni

18. Primer-Aided Truncation for the Creation of Hybrid Proteins

Robert Stabel, Birthe Stuven, Robert Ohlendorf, and Andreas Moeglich

Part VII: Cellular Signaling Switches

19. Engineering Small Molecule Responsive Split-Protein Kinases

Javier Castillo-Montoya and Indraneel Ghosh

20. Directed Evolution Methods to Rewire Signaling Networks

Raphael B. Di Roberto, Benjamin M. Scott, and Sergio G. Peisajovich

Additional information

NLS9781493983452
9781493983452
1493983458
Synthetic Protein Switches: Methods and Protocols by Viktor Stein
New
Paperback
Humana Press Inc.
2018-07-20
341
N/A
Book picture is for illustrative purposes only, actual binding, cover or edition may vary.
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