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Electron Crystallography of Soluble and Membrane Proteins Ingeborg Schmidt-Krey

Electron Crystallography of Soluble and Membrane Proteins By Ingeborg Schmidt-Krey

Electron Crystallography of Soluble and Membrane Proteins by Ingeborg Schmidt-Krey


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Summary

The basic principle of electron crystallography is to calculate a 3D density map by combining the amplitudes obtained from electron diffraction patterns with the experimental phases calculated from images of two-dimensional crystals of membrane or soluble proteins.

Electron Crystallography of Soluble and Membrane Proteins Summary

Electron Crystallography of Soluble and Membrane Proteins: Methods and Protocols by Ingeborg Schmidt-Krey

The basic principle of electron crystallography is to calculate a 3D density map by combining the amplitudes obtained from electron diffraction patterns with the experimental phases calculated from images of two-dimensional crystals of membrane or soluble proteins. This technology is very well developed and has produced a number of atomic models of membrane proteins in a lipid environment. Focused on comprehensive experimental protocols, Electron Crystallography of Soluble and Membrane Proteins: Methods and Protocols covers the entire range of techniques used in electron crystallography, including protein sample preparation, 2D crystallization, and screening in negative stain over electron cryo-microscopy (cryo-EM) and data processing, as well as modeling of conformational changes. Additional chapters provide perspective on past, present, and future challenges as well as complementary methods. Written for the popular Methods in Molecular Biology (TM) series, the work contains the kind of detailed descriptions and implementation advice necessary to ensure successful results.

Comprehensive and cutting-edge, Electron Crystallography of Soluble and Membrane Proteins: Methods and Protocols serves laboratories new to the methods as well as state-of-the-art facilities pursuing this exciting area of protein science.

Electron Crystallography of Soluble and Membrane Proteins Reviews

From the reviews:

This book contains chapters covering all of the key elements of electron crystallography. ... This is definitely a valuable book to have in every laboratory that is actively working in the area of electron crystallography because it provides a great deal of information in one convenient place. It would also be useful for anyone who just wants to get a general understanding about this branch of electron microscopy and structural biology, even without intending to use crystals in their own work. (Robert Glaeser, Microscopy and Microanalysis, Vol. 19 (3), June, 2013)

Table of Contents

1. Introduction to Electron Crystallography

Werner Kuhlbrandt

2. Practical Aspects in Expression and Purification of Membrane Proteins for Structural Analysis

Kutti R. Vinothkumar, Patricia C. Edwards, and Joerg Standfuss

3. Two-Dimensional Crystallization of Membrane Proteins by Reconstitution through Dialysis

Matthew C. Johnson, Tina M. Dreaden, Laura Y. Kim, Frederik Rudolph, Bridgette Barry, and Ingeborg Schmidt-Krey

4. Monolayer Two-Dimensional Crystallization

Luc Lebeau and Catherine Venien-Bryan

5. Screening for Two-Dimensional Crystals by Transmission Electron Microscopy of Negatively Stained Samples

Tina M. Dreaden, Maureen Metcalfe, Laura Y. Kim, Matthew C. Johnson, Bridgette A. Barry, and Ingeborg Schmidt-Krey

6. Low Dose Techniques and Cryo-Electron Microscopy

Yoshinori Fujiyoshi

7. Grid Preparation for Cryo-Electron Microscopy

Nobuhiko Gyobu

8. Recording High-Resolution Images of Two-Dimensional Crystals of Membrane Proteins

Agustin Avila-Sakar, Xueming Li, Shawn Q. Zheng, and Yifan Cheng

9. The Collection of High-Resolution Electron Diffraction Data

Tamir Gonen

10. Image Processing of 2D Crystal Images

Marcel Arheit, Daniel Castano-Diez, Raphael Thierry, Bryant R. Gipson, Xiangyan Zeng, and Henning Stahlberg

11. Merging of Image Data in Electron Crystallography

Marcel Arheit, Daniel Castano-Diez, Raphael Thierry, Priyanka Abeyrathne, Bryant R. Gipson, and Henning Stahlberg

12. Evaluation of Electron Crystallographic Data From Images of Two-Dimensional Crystals

Vinzenz M. Unger

13. Modeling, Docking, and Fitting of Atomic Structures to 3D Maps from Cryo-Electron Microscopy

Gregory S. Allen and David L. Stokes

14. Phasing Electron Diffraction Data by Molecular Replacement: Strategy for Structure Determination and Refinement

Goragot Wisedchaisri and Tamir Gonen

15. High-Throughput Methods for Electron Crystallography

David L. Stokes, Iban Ubarretxena-Belandia, Tamir Gonen, and Andreas Engel

16. Automated Grid Handling and Image Acquisition for Two-Dimensional Crystal Screening

Anchi Cheng

17. Automation of Data Acquisition in Electron Crystallography

Anchi Cheng

18. Automation of Image Processing in Electron Crystallography

Marcel Arheit, Daniel Castano-Diez, Raphael Thierry, Bryant R. Gipson, Xiangyan Zeng, and Henning Stahlberg

19. Choice and Maintenance of Equipment for Electron Crystallography

Deryck J. Mills and Janet Vonck

20. Future Developments in Instrumentation for Electron Crystallography

Kenneth H. Downing

21. Tubular Crystals and Helical Arrays: Structural Determination of HIV-1 Capsid Assemblies Using Iterative Helical Real-Space Reconstruction

Peijun Zhang, Xin Meng, and Gongpu Zhao

22. Single Particle Electron Microscopy

Wilson C.Y. Lau and John L. Rubinstein

23. Electron Tomography of Paracrystalline 2D Arrays

Hanspeter Winkler, Shenping Wu, and Kenneth A. Taylor

24. High-Resolution Imaging of 2D Outer Membrane Protein F (OmpF) Crystals by Atomic Force Microscopy

Dimitrios Fotiadis and Daniel J. Muller

25. Determination of Soluble and Membrane Protein Structures by X-Ray Crystallography

Raquel L. Lieberman, Mary E. Peek, and J. Derrick Watkins

26. Solution Nuclear Magnetic Resonance (NMR) Spectroscopy

James J. Chou and Remy Sounier

27. Structure-Function Insights of Membrane and Soluble Proteins Revealed by Electron Crystallography

Tina M. Dreaden, Bharanidharan Devarajan, Bridgette A. Barry, and Ingeborg Schmidt-Krey

28. Lipid Monolayer and Sparse Matrix Screening for Growing Two-Dimensional Crystals for Electron Crystallography: Methods and Examples

Mark Yeager, Kelly A. Dryden, and Barbie K. Ganser-Pornillos

29. Processing of Electron Diffraction Patterns with the XDP Program

Kaoru Mitsuoka

30. Future Directions of Electron Crystallography

Yoshinori Fujiyoshi

Additional information

NLS9781493958764
9781493958764
1493958763
Electron Crystallography of Soluble and Membrane Proteins: Methods and Protocols by Ingeborg Schmidt-Krey
New
Paperback
Humana Press Inc.
2016-08-23
586
N/A
Book picture is for illustrative purposes only, actual binding, cover or edition may vary.
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Customer Reviews - Electron Crystallography of Soluble and Membrane Proteins